Areas of Interests
Personal
Publications
Lectures

Prof. Dr. Dirk Koschützki

HFU-Logo
Address Health, Safety, Society
Furtwangen University (HFU)
Robert-Gerwig-Platz 1
78120 Furtwangen
Germany
Phone ++49 (0)7723 920 2327
Fax ++49 (0)7723 920 1109
Email Dirk.Koschuetzki[AT]hs-furtwangen.de
GnuPG-ID 0x31BF2E61 dirk.koschuetzki[AT]hs-furtwangen.de
Room A3.19
Office hour Thursday 09:30-11:00 and by appointment
STZ-CIS-Logo
Address Steinbeis-Transferzentrum
Cyber- und Informationssicherheit
Josef-Dorer-Str. 13
78120 Furtwangen
Germany
Phone ++49 (0)7723 9298870
Fax ++49 (0)7723 9298871
Email Dirk.Koschuetzki[AT]stw.de
GnuPG-ID 0x6F7DBC03 Dirk.Koschuetzki[AT]stw.de
Prof. Dr. Dirk Koschützki
Areas of Interests
  • Management of Information Security
  • Security Awareness
  • Network Centralities
  • Network Analysis of (Biological) Networks
Personal
since 01/2013 Head of the Steinbeis-Transferzentrum, Cyber- und Informationssicherheit.
since 03/2008 Professor, Department Health, Safety, Society, Furtwangen University (HFU).
04/2003-02/2008 Research Fellow (Wissenschaftlicher Mitarbeiter), Research Group Network Analysis, Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany (with Prof. Dr. F. Schreiber).
01/2001-03/2003 Project Manager, BDL GmbH, Kriftel/Taunus, Germany.
03/2000-12/2000 Consultant, MediaLift AG, Hamburg, Germany.
02/1999-02/2000 Consultant, METAFrame Technologies GmbH, Germany.
01/1998-01/1999 Research Fellow (Wissenschaftlicher Mitarbeiter), Department of Computer Science, University of Dortmund, Germany (with Prof. Dr. B. Steffen).
1997 Diploma in Computer Science (minor: Mathematics) at the University of Passau, Germany. Thesis entitled: Ein SO-Semantik-basierter Kontrollflußanalysegenerator für imperative Programmiersprachen (in German, supervisor: Prof. Dr. J. Knoop).
Publications

Peer-Reviewed Articles in Journals

  1. Johannes Gräßler, Dirk Koschützki and Falk Schreiber: CentiLib: comprehensive analysis and exploration of network centralities. Bioinformatics, Vol. 28, Issue 8, pp. 1178-1179, 2012.
  2. Dirk Koschützki, Björn H. Junker, Jörg Schwender and Falk Schreiber: Structural Analysis of Metabolic Networks based on Flux Centrality. Journal of Theoretical Biology, Vol. 265, Issue 3, pp. 261-269, 2010.
  3. Gabriel del Rio, Dirk Koschützki and Gerardo Coello: How to identify essential genes from molecular networks?. BMC Systems Biology, 3:102, 2009.
  4. Eva Grafahrend-Belau, Falk Schreiber, Dirk Koschützki and Björn H. Junker: Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism. Plant Physiology, 149(1):585-598, 2009.
  5. David C. Y. Fung, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber and Kai Xu: 2.5D Visualisation of Overlapping Biological Networks. Journal of Integrative Bioinformatics, 5(1):90, 2008.
  6. Dirk Koschützki and Falk Schreiber: Centrality Analysis Methods for Biological Networks and Their Application to Gene Regulatory Networks. Gene Regulation and Systems Biology, Vol. 2, pp 193–201, 2008.
  7. Eva Grafahrend-Belau, Stephan Weise, Dirk Koschützki, Uwe Scholz, Björn H. Junker and Falk Schreiber: MetaCrop: a detailed database of crop plant metabolism. Nucleic Acids Research, Vol. 36, pp D954-D958 , 2008.
  8. Michael Telgkamp, Dirk Koschützki, Henning Schwöbbermeyer and Falk Schreiber: Community-based Linking of Biological Network Resources: Databases, Formats and Tools. Journal of Integrative Bioinformatics, 4(3):71, 2007.
  9. Dirk Koschützki, Henning Schwöbbermeyer and Falk Schreiber: Ranking of network elements based on functional substructures. Journal of Theoretical Biology, Vol. 248, Issue 3, pp 471-479, 2007.
  10. Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber and Björn H. Junker: Meta-All: a system for managing metabolic pathway information. BMC Bioinformatics, 7:465, 2006.
  11. Björn H. Junker, Dirk Koschützki and Falk Schreiber: Exploration of biological network centralities with CentiBiN. BMC Bioinformatics, 7:219, 2006.
  12. Björn H. Junker, Dirk Koschützki and Falk Schreiber: Kinetic Modelling with the Systems Biology Modelling Environment SyBME. Journal of Integrative Bioinformatics, 3(1):18, 2006.
  13. Christian Klukas, Dirk Koschützki and Falk Schreiber: Graph Pattern Analysis with PatternGravisto. Journal of Graph Algorithms and Applications, Vol. 9, no. 1, pp. 19-29, 2005.

Peer-Reviewed Articles in Conference Proceedings

  1. David Cho Yau Fung, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber and Kai Xu: Visual Analysis of Overlapping Biological Networks. Proceedings of the 13th International Conference on Information Visualisation (IV 2009), 337-342, 2009.
  2. Eva Grafahrend-Belau, Björn H. Junker, Dirk Koschützki, Christian Klukas, Stephan Weise, Uwe Scholz and Falk Schreiber: Towards Systems Biology of Developing Barley Grains: a Framework for Modeling Metabolism. Proceedings of the 5th International Workshop on Computational Systems Biology (WCSB'08), TICPS Series, 41:41-44, 2008.
  3. Tim Dwyer, Seok-Hee Hong, Dirk Koschützki, Falk Schreiber and Kai Xu: Visual Analysis of Network Centralities. Proceedings of the Asia Pacific Symposium on Information Visualisation (APVIS 2006), pp. 189-197, CRPIT 60, Australian Computer Society, 2006.
  4. Adel Ahmed, Tim Dwyer, Michael Forster, Xiaoyan Fu, Joshua Ho, Seok-Hee Hong, Dirk Koschützki, Colin Murray, Nikola S. Nikolov, Ronnie Taib, Alexandre Tarassov and Kai Xu: GEOMI: GEOmetry for Maximum Insight. Proceedings of the 13th International Symposium on Graph Drawing (GD 2005), pp. 468-479, LNCS 3843, Springer-Verlag, 2006.
  5. Dirk Koschützki and Falk Schreiber: Comparison of Centralities for Biological Networks. Proceedings of the German Conference on Bioinformatics (GCB 2004), pp. 199-206, LNI P-53, Springer-Verlag, 2004.
  6. Jens Knoop, Dirk Koschützki and Bernhard Steffen: Basic-block Graphs: Living Dinosaurs?. Proceedings of the 7th International Conference on Compiler Construction (CC'98), pp. 65-79, LNCS 1383, Springer-Verlag, 1998.
  7. Volker Braun, Jens Knoop and Dirk Koschützki: Cool: A Control-flow Generator for System Analysis. Proceedings of the 7th International Conference on Compiler Construction (CC'98), pp. 306-309, LNCS 1383, Springer-Verlag, 1998.
  8. Michael von der Beeck, Volker Braun, Andreas Claßen, Achim Dannecker, Carsten Friedrich, Dirk Koschützki, Tiziana Margaria, Falk Schreiber and Bernhard Steffen: Graphs in METAFrame: The Unifying Power of Polymorphism. In Proceedings of the 3rd International Workshop on Tools and Algorithms for the Construction and Analysis of Systems (TACAS'97), pp. 112-129, LNCS 1217, Springer-Verlag, 1997.
  9. Marion Klein, Jens Knoop, Dirk Koschützki and Bernhard Steffen: DFA&OPT-METAFrame: A Tool Kit for Program Analysis and Optimization. In Proceedings of the 2nd International Workshop on Tools and Algorithms for the Construction and Analysis of Systems (TACAS'96), pp. 422-426, LNCS 1055, Springer-Verlag, 1996.

Book Chapters, Thesis

  1. Dirk Koschützki: Zentralitätsanalyse molekularbiologischer Netzwerke. PhD thesis, Martin-Luther-Universität Halle-Wittenberg, 110 pages, 2011.
  2. Eva Grafahrend-Belau, Björn H. Junker, Christian Klukas, Dirk Koschützki, Falk Schreiber and Henning Schwöbbermeyer: Topology of Plant Metabolic Networks. In Jörg Schwender (Ed.), Plant Metabolic Networks, pp. 173-209, Springer-Verlag, 2009.
  3. Dirk Koschützki: Network Centralities. In Björn H. Junker and Falk Schreiber (Eds.), Analysis of Biological Networks, pp. 65-84, Wiley Series on Bioinformatics, Computational Techniques and Engineering (Yi Pan and Albert Y. Zomaya, Series Editors), Wiley, 2008.
  4. Dirk Koschützki, Katharina Anna Lehmann, Leon Peeters, Stefan Richter, Dagmar Tenfelde-Podehl and Oliver Zlotowski: Centrality Indices. In Ulrik Brandes and Thomas Erlebach (Eds.), Network Analysis: Methodological Foundations, pp. 16-61, LNCS 3418, Springer-Verlag, 2005.
  5. Riko Jacob, Dirk Koschützki, Katharina Anna Lehmann, Leon Peeters and Dagmar Tenfelde-Podehl: Algorithms for Centrality Indices. In Ulrik Brandes and Thomas Erlebach (Eds.), Network Analysis: Methodological Foundations, pp. 62-82, LNCS 3418, Springer-Verlag, 2005.
  6. Dirk Koschützki, Katharina Anna Lehmann, Dagmar Tenfelde-Podehl and Oliver Zlotowski: Advanced Centrality Concepts. In Ulrik Brandes and Thomas Erlebach (Eds.), Network Analysis: Methodological Foundations, pp. 83-111, LNCS 3418, Springer-Verlag, 2005.
  7. Dirk Koschützki: Ein SO-Semantik-basierter Kontrollflußanalysegenerator für imperative Programmiersprachen. Diploma thesis, University of Passau, Germany, 1997.

Technical Reports

  1. Volker Braun, Jens Knoop and Dirk Koschützki: Cool: A control-flow generator for system analysis. MIP-Bericht Nr. 9801, Faculty of Mathematics and Informatics, University of Passau, Germany, 1998.
  2. Jens Knoop and Dirk Koschützki: From Programs to Program Graphs Automatically: A General and Flexible Control-flow Analysis Generator. Proceedings of the 9th Biennial Workshop of the RWTH Aachen, CAU Kiel, and TU München on "Programming Languages and Fundamentals of Programming", pp. 64-74, Bericht Nr. 9717, Institute of Computer Science and Applied Mathematics, Christian-Albrechts-University of Kiel, Germany, 1997.
  3. Jens Knoop, Dirk Koschützki and Bernhard Steffen: Basic-block Graphs: Living Dinosaurs?. MIP-Bericht Nr. 9715, Faculty of Mathematics and Informatics, University of Passau, Germany, 1997.
Lectures

Current Courses

  • Information Security (Lecture)
    (Students of Security and Safety Engineering (Bachelor), 4. Semester, 6 ECTS.)
  • Information Technology (Lecture and Lab)
    (Students of Security and Safety Engineering (Bachelor), 3. Semester, 6 ECTS.)

Previous Courses

  • Computer Science 1 (Lecture and Lab)
    (Students of Security and Safety Engineering (Bachelor), 2. Semester, 6 ECTS.)
  • Computer Science 2 (Lecture and Lab)
    (Students of Security and Safety Engineering (Bachelor), 3. Semester, 6 ECTS.)
  • System Software (Lecture and Lab)
    (Students of Computer Engineering (Bachelor), 3. Semester, 6 ECTS.)
  • Distributed Systems (Lecture and Lab)
    (Students of Computer Engineering (Bachelor), 3. Semester, 6 ECTS.)
A note for my students: materials for the lectures are available in FELIX2.